PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G23790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 312aa    MW: 33506.5 Da    PI: 8.0957
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G23790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.21e-191560147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEde l ++v+++G ++W++I r+++ gR++k+c++rw + 
  ORUFI06G23790.1 15 RGPWSPEEDEALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 60
                     89******************************.***********985 PP

2Myb_DNA-binding52.61e-1667109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r ++T+eEd  +++a+++lG++ W++Iar ++ gRt++ +k++w+
  ORUFI06G23790.1  67 RRPFTAEEDATILRAHARLGNR-WAAIARLLQ-GRTDNAVKNHWN 109
                      679*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.7461065IPR017930Myb domain
SuperFamilySSF466893.74E-3112108IPR009057Homeodomain-like
SMARTSM007172.2E-171463IPR001005SANT/Myb domain
PfamPF002498.7E-191560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-261668IPR009057Homeodomain-like
CDDcd001672.14E-161759No hitNo description
SMARTSM007176.3E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.56367116IPR017930Myb domain
PfamPF002491.5E-1467109IPR001005SANT/Myb domain
CDDcd001673.20E-1169109No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2269116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGGGGGVEAD CDRIRGPWSP EEDEALRRLV ERHGARNWTA IGREIPGRSG KSCRLRWCNQ  60
LSPQVERRPF TAEEDATILR AHARLGNRWA AIARLLQGRT DNAVKNHWNC SLKRKLAVAT  120
TTTTTTTTGA AAAPGVVADA AELVERPCKR FSPTPDSPSG SGSGSDRSDL SHGGGFGQIF  180
RPVARTGAFE PVDCAISRRQ EEDPFTSLSL SLPGTDQRFN HDSAHSHFQE LPSSPSPPPP  240
PPPAAAASTT QYPFTPEFAA AMQEMIRAEV HKYMVSVGVR AGCGDAGGAD LHMPQLVEGV  300
MRAAAERVGR MH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-38121164108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00400DAPTransfer from AT3G50060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4062980.0CU406298.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110G10, full insert sequence.
GenBankCU4067770.0CU406777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108L17, full insert sequence.
GenBankCU4069040.0CU406904.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641187.10.0PREDICTED: transcription factor MYB44
SwissprotQ9FDW14e-62MYB44_ARATH; Transcription factor MYB44
TrEMBLA0A0E0Q0K70.0A0A0E0Q0K7_ORYRU; Uncharacterized protein
STRINGBGIOSGA020819-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os06g43090.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.16e-59myb domain protein 77